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| The GENCODE pseudogene resource B Pei, C Sisu, A Frankish, C Howald, L Habegger, XJ Mu, R Harte, ... Genome biology 13, 1-26, 2012 | 359 | 2012 |
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| Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ... Nature communications 6 (1), 5903, 2015 | 89 | 2015 |
| Comparative analysis of pseudogenes across three phyla C Sisu, B Pei, J Leng, A Frankish, Y Zhang, S Balasubramanian, R Harte, ... Proceedings of the National Academy of Sciences 111 (37), 13361-13366, 2014 | 81 | 2014 |
| Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division A Abyzov, R Iskow, O Gokcumen, DW Radke, S Balasubramanian, B Pei, ... Genome research 23 (12), 2042-2052, 2013 | 56 | 2013 |
| A bayesian approach to pathway analysis by integrating gene–gene functional directions and microarray data Y Zhao, MH Chen, B Pei, D Rowe, DG Shin, W Xie, F Yu, L Kuo Statistics in biosciences 4, 105-131, 2012 | 19 | 2012 |
| Reconstruction of biological networks by incorporating prior knowledge into Bayesian network models B Pei, DG Shin Journal of computational biology 19 (12), 1324-1334, 2012 | 17 | 2012 |
| Perspectives on ENCODE F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama Nature 583 (7818), 693-699, 2020 | 16 | 2020 |
| Pbc: A software framework facilitating pattern-based clustering for microarray data analysis DG Shin, SH Hong, P Joshi, R Nori, B Pei, HW Wang, P Harrington, L Kuo, ... 2009 International Joint Conference on Bioinformatics, Systems Biology and …, 2009 | 9 | 2009 |
| A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships P Joshi, B Pei, SH Hong, I Kalajzic, DJ Shin, D Rowe, DG Shin 2013 IEEE International Conference on Bioinformatics and Biomedicine, 210-213, 2013 | 7 | 2013 |
| Learning Bayesian networks with integration of indirect prior knowledge B Pei, DW Rowe, DG Shin International journal of data mining and bioinformatics 4 (5), 505-519, 2010 | 6 | 2010 |
| Reverse engineering of gene regulatory network by integration of prior global gene regulatory information B Pei, DW Rowe, DG Shin 2008 IEEE International Conference on Bioinformatics and Biomedicine, 129-134, 2008 | 5 | 2008 |
| Computing consistency between microarray data and known gene regulation relationships DG Shin, SA Kazmi, B Pei, YA Kim, J Maddox, R Nori, A Wong, W Krueger, ... IEEE Transactions on Information Technology in Biomedicine 13 (6), 1075-1082, 2009 | 3 | 2009 |
| Meta Analysis of Microarray Data Using Gene Regulation Pathways SA Kazmi, YA Kim, B Pei, N Ravi, DW Rowe, HW Wang, A Wong, DG Shin 2008 IEEE International Conference on Bioinformatics and Biomedicine, 37-42, 2008 | 3 | 2008 |
| Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression for thousands of genes DD Pervouchine, S Djebali, A Breschi, CA Davis, P Prieto Barja, A Dobin, ... BioRxiv, 010884, 2014 | 1 | 2014 |
