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Ana Abecasis
Ana Abecasis
Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa
Verified email at ihmt.unl.pt
Title
Cited by
Cited by
Year
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools
AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ...
Infection, genetics and evolution 19, 337-348, 2013
3832013
HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics
AB Abecasis, AMJ Wensing, D Paraskevis, J Vercauteren, K Theys, ...
Retrovirology 10, 1-13, 2013
1812013
A genomic signature and the identification of new sporulation genes
AB Abecasis, M Serrano, R Alves, L Quintais, JB Pereira-Leal, ...
Journal of bacteriology 195 (9), 2101-2115, 2013
1382013
Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution
AB Abecasis, AM Vandamme, P Lemey
Journal of virology 83 (24), 12917-12924, 2009
1322009
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form
AB Abecasis, P Lemey, N Vidal, T de Oliveira, M Peeters, R Camacho, ...
Journal of virology 81 (16), 8543-8551, 2007
1292007
Phylogeography of dengue virus serotype 4, Brazil, 2010–2011
MRT Nunes, NR Faria, HB Vasconcelos, DB de Almeida Medeiros, ...
Emerging infectious diseases 18 (11), 1858, 2012
1122012
Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G
AB Abecasis, K Deforche, J Snoeck, LT Bacheler, P McKenna, ...
Aids 19 (16), 1799-1806, 2005
1032005
Investigation of baseline susceptibility to protease inhibitors in HIV-1 subtypes C, F, G and CRF02_AG
AB Abecasis, K Deforche, LT Bacheler, P McKenna, AP Carvalho, ...
Antiviral therapy 11 (5), 581-589, 2006
832006
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ...
Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020
812020
HIV and tuberculosis co-infection among migrants in Europe: A systematic review on the prevalence, incidence and mortality
AM Tavares, I Fronteira, I Couto, D Machado, M Viveiros, AB Abecasis, ...
PloS one 12 (9), e0185526, 2017
732017
Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon
NR Faria, MA Suchard, A Abecasis, JD Sousa, N Ndembi, I Bonfim, ...
Infection, Genetics and Evolution 12 (2), 453-460, 2012
712012
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ...
PLoS neglected tropical diseases 13 (5), e0007231, 2019
652019
Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe
D Frentz, DAMC Van de Vijver, AB Abecasis, J Albert, O Hamouda, ...
BMC Infectious Diseases 14, 1-12, 2014
592014
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
PJK Libin, K Deforche, AB Abecasis, K Theys
Bioinformatics 35 (10), 1763-1765, 2019
572019
Limited cross-border infections in patients newly diagnosed with HIV in Europe
D Frentz, AMJ Wensing, J Albert, D Paraskevis, AB Abecasis, O Hamouda, ...
Retrovirology 10, 1-10, 2013
532013
The impact of HIV-1 within-host evolution on transmission dynamics
K Theys, P Libin, AC Pineda-Pena, A Nowe, AM Vandamme, AB Abecasis
Current opinion in virology 28, 92-101, 2018
512018
Patterns of transmitted HIV drug resistance in Europe vary by risk group
D Frentz, D van de Vijver, A Abecasis, J Albert, O Hamouda, L Jørgensen, ...
PloS one 9 (4), e94495, 2014
512014
HIV-1 subtype is an independent predictor of reverse transcriptase mutation K65R in HIV-1 patients treated with combination antiretroviral therapy including tenofovir
K Theys, J Vercauteren, J Snoeck, M Zazzi, RJ Camacho, C Torti, ...
Antimicrobial agents and chemotherapy 57 (2), 1053-1056, 2013
482013
Phylogenetic analysis as a forensic tool in HIV transmission investigations
AB Abecasis, M Pingarilho, AM Vandamme
Aids 32 (5), 543-554, 2018
442018
Science in court: the myth of HIV fingerprinting
AB Abecasis, AM Geretti, J Albert, L Power, M Weait, AM Vandamme
The Lancet infectious diseases 11 (2), 78-79, 2011
422011
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