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Jeff Vierstra
Jeff Vierstra
Investigator, Altius Institute for Biomedical Sciences
Verified email at altius.org - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
140052012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
60532015
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
30692012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
19242014
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
12302020
An expansive human regulatory lexicon encoded in transcription factor footprints
S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ...
Nature 489 (7414), 83-90, 2012
9512012
BEDOPS: high-performance genomic feature operations
S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ...
Bioinformatics 28 (14), 1919-1920, 2012
9042012
An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level
DE Bauer, SC Kamran, S Lessard, J Xu, Y Fujiwara, C Lin, Z Shao, ...
Science 342 (6155), 253-257, 2013
6742013
Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution
A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ...
Cell 161 (3), 541-554, 2015
3752015
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
J Vierstra, E Rynes, R Sandstrom, M Zhang, T Canfield, RS Hansen, ...
Science 346 (6212), 1007-1012, 2014
2802014
Global reference mapping of human transcription factor footprints
J Vierstra, J Lazar, R Sandstrom, J Halow, K Lee, D Bates, M Diegel, ...
Nature 583 (7818), 729-736, 2020
2712020
Conservation of trans-acting circuitry during mammalian regulatory evolution
AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ...
Nature 515 (7527), 365-370, 2014
2432014
Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
MT Maurano, E Haugen, R Sandstrom, J Vierstra, A Shafer, R Kaul, ...
Nature genetics 47 (12), 1393-1401, 2015
2372015
Index and biological spectrum of human DNase I hypersensitive sites
W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ...
Nature 584 (7820), 244-251, 2020
2352020
Functional footprinting of regulatory DNA
J Vierstra, A Reik, KH Chang, S Stehling-Sun, Y Zhou, SJ Hinkley, ...
Nature methods 12 (10), 927-930, 2015
1512015
Personal and population genomics of human regulatory variation
B Vernot, AB Stergachis, MT Maurano, J Vierstra, S Neph, RE Thurman, ...
Genome research 22 (9), 1689-1697, 2012
1342012
Genome‐scale mapping of DNase I hypersensitivity
S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ...
Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013
1132013
Genomic footprinting
J Vierstra, JA Stamatoyannopoulos
Nature methods 13 (3), 213-221, 2016
1012016
eFORGE v2. 0: updated analysis of cell type-specific signal in epigenomic data
CE Breeze, AP Reynolds, J Van Dongen, I Dunham, J Lazar, S Neph, ...
Bioinformatics 35 (22), 4767-4769, 2019
972019
Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH
J Vierstra, H Wang, S John, R Sandstrom, JA Stamatoyannopoulos
Nature methods 11 (1), 66-72, 2014
752014
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