| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 11638 | 2012 |
| Initial sequencing and comparative analysis of the mouse genome RH Waterston, L Pachter Nature 420 (6915), 520-562, 2002 | 7307 | 2002 |
| GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 3884 | 2012 |
| The UCSC genome browser database D Karolchik, R Baertsch, M Diekhans, TS Furey, A Hinrichs, YT Lu, ... Nucleic acids research 31 (1), 51-54, 2003 | 1672 | 2003 |
| The UCSC genome browser database: update 2011 PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ... Nucleic acids research 39 (suppl_1), D876-D882, 2010 | 1192 | 2010 |
| The UCSC genome browser database: update 2006 AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ... Nucleic acids research 34 (suppl_1), D590-D598, 2006 | 924 | 2006 |
| The UCSC genome browser database: 2015 update KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ... Nucleic acids research 43 (D1), D670-D681, 2015 | 901 | 2015 |
| Using native and syntenically mapped cDNA alignments to improve de novo gene finding M Stanke, M Diekhans, R Baertsch, D Haussler Bioinformatics 24 (5), 637-644, 2008 | 898 | 2008 |
| The UCSC Genome Browser database: extensions and updates 2013 LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ... Nucleic acids research 41 (D1), D64-D69, 2012 | 798 | 2012 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 765 | 2019 |
| ENCODE data in the UCSC Genome Browser: year 5 update KR Rosenbloom, CA Sloan, VS Malladi, TR Dreszer, K Learned, ... Nucleic acids research 41 (D1), D56-D63, 2012 | 734 | 2012 |
| The UCSC genome browser database: 2014 update D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ... Nucleic acids research 42 (D1), D764-D770, 2014 | 716 | 2014 |
| The UCSC genome browser database: update 2010 B Rhead, D Karolchik, RM Kuhn, AS Hinrichs, AS Zweig, PA Fujita, ... Nucleic acids research 38 (suppl_1), D613-D619, 2010 | 704 | 2010 |
| A discriminative framework for detecting remote protein homologies T Jaakkola, M Diekhans, D Haussler Journal of computational biology 7 (1-2), 95-114, 2000 | 661 | 2000 |
| Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ... Human molecular genetics 23 (22), 5866-5878, 2014 | 589 | 2014 |
| Using the Fisher kernel method to detect remote protein homologies. TS Jaakkola, M Diekhans, D Haussler ISMB 99, 149-158, 1999 | 579 | 1999 |
| The UCSC genome browser database: 2008 update D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ... Nucleic acids research 36 (suppl_1), D773-D779, 2007 | 575 | 2007 |
| The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC) DS Gerhard, L Wagner, EA Feingold, CM Shenmen, LH Grouse, ... Genome research 14 (10 B), 2121-2127, 2004 | 569 | 2004 |
| The UCSC known genes F Hsu, WJ Kent, H Clawson, RM Kuhn, M Diekhans, D Haussler Bioinformatics 22 (9), 1036-1046, 2006 | 561 | 2006 |
| The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes KD Pruitt, J Harrow, RA Harte, C Wallin, M Diekhans, DR Maglott, ... Genome research 19 (7), 1316-1323, 2009 | 556 | 2009 |
