Manching Ku
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An integrated encyclopedia of DNA elements in the human genome.
BE Bernstein, E Birney, I Dunham, ED Green, C Gunter, M Snyder
Nature 489 (7414), 57, 2012
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448 (7153), 553-560, 2007
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
M Wernig, A Meissner, R Foreman, T Brambrink, M Ku, K Hochedlinger, ...
nature 448 (7151), 318-324, 2007
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
Dissecting direct reprogramming through integrative genomic analysis
TS Mikkelsen, J Hanna, X Zhang, M Ku, M Wernig, P Schorderet, ...
Nature 454 (7200), 49-55, 2008
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ...
PLoS genetics 4 (10), e1000242, 2008
Directly reprogrammed human neurons retain aging-associated transcriptomic signatures and reveal age-related nucleocytoplasmic defects
J Mertens, ACM Paquola, M Ku, E Hatch, L Böhnke, S Ladjevardi, ...
Cell stem cell 17 (6), 705-718, 2015
Jarid2 and PRC2, partners in regulating gene expression
G Li, R Margueron, M Ku, P Chambon, BE Bernstein, D Reinberg
Genes & development 24 (4), 368-380, 2010
GC-rich sequence elements recruit PRC2 in mammalian ES cells
EM Mendenhall, RP Koche, T Truong, VW Zhou, B Issac, AS Chi, M Ku, ...
PLoS genetics 6 (12), e1001244, 2010
Reprogramming factor expression initiates widespread targeted chromatin remodeling
RP Koche, ZD Smith, M Adli, H Gu, M Ku, A Gnirke, BE Bernstein, ...
Cell stem cell 8 (1), 96-105, 2011
An epigenetic mechanism of resistance to targeted therapy in T cell acute lymphoblastic leukemia
B Knoechel, JE Roderick, KE Williamson, J Zhu, JG Lohr, MJ Cotton, ...
Nature genetics 46 (4), 364-370, 2014
SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing
K Isono, TA Endo, M Ku, D Yamada, R Suzuki, J Sharif, T Ishikura, ...
Developmental cell 26 (6), 565-577, 2013
Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons
ST Schafer, ACM Paquola, S Stern, D Gosselin, M Ku, M Pena, TJM Kuret, ...
Nature neuroscience 22 (2), 243-255, 2019
Control of phenotypic plasticity of smooth muscle cells by bone morphogenetic protein signaling through the myocardin-related transcription factors
G Lagna, MM Ku, PH Nguyen, NA Neuman, BN Davis, A Hata
Journal of Biological Chemistry 282 (51), 37244-37255, 2007
H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions
M Ku, RP Jaffe Jacob D, Koche, E Rheinbay, M Endoh, H Koseki, ...
Genome Biology 13, R85, 2012
Spatially resolved multi-omics deciphers bidirectional tumor-host interdependence in glioblastoma
VM Ravi, P Will, J Kueckelhaus, N Sun, K Joseph, H Salié, L Vollmer, ...
Cancer cell 40 (6), 639-655. e13, 2022
Negative regulation of the Wnt–β‐catenin pathway by the transcriptional repressor HBP1
EM Sampson, ZK Haque, MC Ku, SG Tevosian, C Albanese, RG Pestell, ...
The EMBO journal, 2001
Differentiation of Inflammation-responsive Astrocytes from Glial Progenitors Generated from Human Induced Pluripotent Stem Cells
S Renata, KC Vadodaria, BN Jaeger, M Arianna, S Lefcochilos-Fogelquist, ...
Stem Cell Report 8 (6), 1757-1769, 2017
Age-dependent instability of mature neuronal fate in induced neurons from Alzheimer’s patients
J Mertens, JR Herdy, L Traxler, ST Schafer, JCM Schlachetzki, L Böhnke, ...
Cell stem cell 28 (9), 1533-1548. e6, 2021
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