Manching Ku
Manching Ku
Faculty of Medicine, University of Freiburg
Verified email at uniklinik-freiburg.de - Homepage
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome.
BE Bernstein, E Birney, I Dunham, ED Green, C Gunter, M Snyder
Nature 489 (7414), 57, 2012
9336*2012
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelsen, M Ku, DB Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448 (7153), 553, 2007
38552007
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
M Wernig, A Meissner, R Foreman, T Brambrink, M Ku, K Hochedlinger, ...
Nature 448 (7151), 318, 2007
31192007
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
23462011
Dissecting direct reprogramming through integrative genomic analysis
TS Mikkelsen, J Hanna, X Zhang, M Ku, M Wernig, P Schorderet, ...
Nature 454 (7200), 49, 2008
15072008
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS Biology 9 (4), e1001046, 2011
11092011
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ...
PLoS genetics 4 (10), e1000242, 2008
9132008
Jarid2 and PRC2, partners in regulating gene expression
G Li, R Margueron, M Ku, P Chambon, BE Bernstein, D Reinberg
Genes & development 24 (4), 368-380, 2010
3992010
GC-rich sequence elements recruit PRC2 in mammalian ES cells
EM Mendenhall, RP Koche, T Truong, VW Zhou, B Issac, AS Chi, M Ku, ...
PLoS genetics 6 (12), e1001244, 2010
3412010
Reprogramming factor expression initiates widespread targeted chromatin remodeling
RP Koche, ZD Smith, M Adli, H Gu, M Ku, A Gnirke, BE Bernstein, ...
Cell stem cell 8 (1), 96-105, 2011
3322011
Directly reprogrammed human neurons retain aging-associated transcriptomic signatures and reveal age-related nucleocytoplasmic defects
J Mertens, ACM Paquola, M Ku, E Hatch, L Böhnke, S Ladjevardi, ...
Cell stem cell 17 (6), 705-718, 2015
2542015
An epigenetic mechanism of resistance to targeted therapy in T cell acute lymphoblastic leukemia
B Knoechel, JE Roderick, KE Williamson, J Zhu, JG Lohr, MJ Cotton, ...
Nature genetics 46 (4), 364, 2014
2132014
Control of phenotypic plasticity of smooth muscle cells by bone morphogenetic protein signaling through the myocardin-related transcription factors
G Lagna, MM Ku, PH Nguyen, NA Neuman, BN Davis, A Hata
Journal of Biological Chemistry 282 (51), 37244-37255, 2007
1602007
Negative regulation of the Wnt–β‐catenin pathway by the transcriptional repressor HBP1
EM Sampson, ZK Haque, MC Ku, SG Tevosian, C Albanese, RG Pestell, ...
The EMBO journal 20 (16), 4500-4511, 2001
1602001
SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing
K Isono, TA Endo, M Ku, D Yamada, R Suzuki, J Sharif, T Ishikura, ...
Developmental cell 26 (6), 565-577, 2013
1422013
Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA
A Goren, F Ozsolak, N Shoresh, M Ku, M Adli, C Hart, M Gymrek, O Zuk, ...
Nature methods 7 (1), 47, 2010
1322010
H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions
M Ku, RP Jaffe Jacob D, Koche, E Rheinbay, M Endoh, H Koseki, ...
Genome Biology 13, R85, 2012
1152012
In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites
JD Sander, CL Ramirez, SJ Linder, V Pattanayak, N Shoresh, M Ku, ...
Nucleic acids research 41 (19), e181-e181, 2013
742013
Wilms tumor chromatin profiles highlight stem cell properties and a renal developmental network
AP Aiden, MN Rivera, E Rheinbay, M Ku, EJ Coffman, TT Truong, ...
Cell stem cell 6 (6), 591-602, 2010
732010
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
TS Mikkelson, M Ku, D Jaffe, B Issac, E Lieberman, G Giannoukos, ...
Nature 448, 553-560, 2007
572007
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