| Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene–based approaches AC Schürch, S Arredondo-Alonso, RJL Willems, RV Goering Clinical microbiology and infection 24 (4), 350-354, 2018 | 437 | 2018 |
| CRISPR/Cas9-mediated genome editing of herpesviruses limits productive and latent infections FR van Diemen, EM Kruse, MJG Hooykaas, CE Bruggeling, AC Schürch, ... PLoS pathogens 12 (6), e1005701, 2016 | 325 | 2016 |
| On the (im) possibility of reconstructing plasmids from whole-genome short-read sequencing data S Arredondo-Alonso, RJ Willems, W Van Schaik, AC Schürch Microbial genomics 3 (10), e000128, 2017 | 254 | 2017 |
| Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data JM Bryant, AC Schürch, H Van Deutekom, SR Harris, JL De Beer, ... BMC infectious diseases 13, 1-12, 2013 | 239 | 2013 |
| mlplasmids: A user-friendly tool to predict plasmid-and chromosome-derived sequences for single species S Arredondo-Alonso, MRC Rogers, JC Braat, TD Verschuuren, J Top, ... Microbial genomics 4 (11), e000224, 2018 | 137 | 2018 |
| Exploring the potential of next-generation sequencing in detection of respiratory viruses S Prachayangprecha, CME Schapendonk, MP Koopmans, ... Journal of clinical microbiology 52 (10), 3722-3730, 2014 | 127 | 2014 |
| DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing AC Schürch, D van Soolingen Infection, genetics and evolution 12 (4), 602-609, 2012 | 121 | 2012 |
| Comparative Analysis of Mycobacterium tuberculosis pe and ppe Genes Reveals High Sequence Variation and an Apparent Absence of Selective Constraints CRE McEvoy, R Cloete, B Müller, AC Schürch, PD Van Helden, ... PloS one 7 (4), e30593, 2012 | 115 | 2012 |
| Challenges and opportunities for whole‐genome sequencing–based surveillance of antibiotic resistance AC Schürch, W van Schaik Annals of the New York Academy of Sciences 1388 (1), 108-120, 2017 | 114 | 2017 |
| Physical mapping and identification of a candidate for the leaf rust resistance gene Lr1 of wheat JW Qiu, AC Schürch, N Yahiaoui, LL Dong, HJ Fan, ZJ Zhang, B Keller, ... Theoretical and Applied Genetics 115, 159-168, 2007 | 112 | 2007 |
| Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium S Arredondo-Alonso, J Top, A McNally, S Puranen, M Pesonen, J Pensar, ... MBio 11 (1), 10.1128/mbio. 03284-19, 2020 | 107 | 2020 |
| New viruses in idiopathic human diarrhea cases, the Netherlands SL Smits, CME Schapendonk, J van Beek, H Vennema, AC Schürch, ... Emerging infectious diseases 20 (7), 1218, 2014 | 107 | 2014 |
| High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster AC Schürch, K Kremer, O Daviena, A Kiers, MJ Boeree, RJ Siezen, ... Journal of clinical microbiology 48 (9), 3403-3406, 2010 | 106 | 2010 |
| The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale AC Schürch, K Kremer, A Kiers, O Daviena, MJ Boeree, RJ Siezen, ... Infection, genetics and evolution 10 (1), 108-114, 2010 | 104 | 2010 |
| Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era AK Pöntinen, J Top, S Arredondo-Alonso, G Tonkin-Hill, AR Freitas, ... Nature communications 12 (1), 1523, 2021 | 90 | 2021 |
| Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010–2011 SL Smits, EE Zijlstra, JJ van Hellemond, CME Schapendonk, R Bodewes, ... Emerging infectious diseases 19 (9), 1511, 2013 | 89 | 2013 |
| European 2–A clonal complex of Mycobacterium bovis dominant in the Iberian Peninsula S Rodriguez-Campos, AC Schürch, J Dale, AJ Lohan, MV Cunha, ... Infection, Genetics and Evolution 12 (4), 866-872, 2012 | 78 | 2012 |
| Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database GA De Souza, MØ Arntzen, S Fortuin, AC Schürch, H Målen, CRE McEvoy, ... Molecular & cellular proteomics 10 (1), 2011 | 76 | 2011 |
| Prevalence, risk factors and genetic characterisation of extended-spectrum beta-lactamase and carbapenemase-producing Enterobacteriaceae (ESBL-E and CPE): a community-based … G van den Bunt, W van Pelt, L Hidalgo, J Scharringa, SC de Greeff, ... Eurosurveillance 24 (41), 1800594, 2019 | 73 | 2019 |
| Combined Species Identification, Genotyping, and Drug Resistance Detection of Mycobacterium tuberculosis Cultures by MLPA on a Bead-Based Array I Bergval, S Sengstake, N Brankova, V Levterova, E Abadía, N Tadumaze, ... Public Library of Science 7 (8), e43240, 2012 | 70 | 2012 |
