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Martin Raden, nee Mann
Martin Raden, nee Mann
Verified email at informatik.uni-freiburg.de - Homepage
Title
Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences.
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
7722018
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
M Mann, PR Wright, R Backofen
Nucleic Acids Research 45 (W1), W435–W439, 2017
5032017
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
3582014
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
2502013
Freiburg RNA tools: a central online resource for RNA-focused research and teaching
M Raden, SM Ali, OS Alkhnbashi, A Busch, F Costa, JA Davis, ...
Nucleic acids research 46 (W1), 2018
1202018
CPSP-tools–Exact and complete algorithms for high-throughput 3D lattice protein studies
M Mann, S Will, R Backofen
BMC bioinformatics 9, 1-8, 2008
632008
antaRNA: ant colony-based RNA sequence design
R Kleinkauf, M Mann, R Backofen
Bioinformatics 31 (19), 3114-3121, 2015
492015
MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions
K Kundu, M Mann, F Costa, R Backofen
Bioinformatics 30 (18), 2668-2669, 2014
452014
CPSP-web-tools: a server for 3D lattice protein studies
M Mann, C Smith, M Rabbath, M Edwards, S Will, R Backofen
Bioinformatics 25 (5), 676-677, 2009
412009
GLASSgo–automated and reliable detection of sRNA homologs from a single input sequence
SC Lott, RA Schäfer, M Mann, R Backofen, WR Hess, B Voß, J Georg
Frontiers in genetics, 124, 2018
392018
CARNA—alignment of RNA structure ensembles
DA Sorescu, M Möhl, M Mann, R Backofen, S Will
Nucleic acids research 40 (W1), W49-W53, 2012
382012
Producing high-accuracy lattice models from protein atomic coordinates including side chains
M Mann, R Saunders, C Smith, R Backofen, CM Deane
Advances in bioinformatics 2012, 2012
322012
antaRNA–Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization
R Kleinkauf, T Houwaart, R Backofen, M Mann
BMC bioinformatics 16 (1), 1-7, 2015
312015
Atom mapping with constraint programming
M Mann, F Nahar, N Schnorr, R Backofen, PF Stadler, C Flamm
Algorithms for Molecular Biology 9, 1-12, 2014
312014
Protein folding simulation by two-stage optimization
AD Ullah, L Kapsokalivas, M Mann, K Steinhöfel
International Symposium on Intelligence Computation and Applications, 138-145, 2009
312009
The graph grammar library-a generic framework for chemical graph rewrite systems
M Mann, H Ekker, C Flamm
Theory and Practice of Model Transformations: 6th International Conference …, 2013
292013
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data
JA Davis, SJ Saunders, M Mann, R Backofen
Nucleic Acids Research 45 (15), 8745-8757, 2017
222017
Efficient exploration of discrete energy landscapes
M Mann, K Klemm
Physical Review E 83 (1), 011113, 2011
222011
Evolution of metabolic networks: a computational frame-work
C Flamm, A Ullrich, H Ekker, M Mann, D Högerl, M Rohrschneider, ...
Journal of Systems Chemistry 1, 1-14, 2010
222010
Classifying proteinlike sequences in arbitrary lattice protein models using LatPack
M Mann, D Maticzka, R Saunders, R Backofen
HFSP journal 2 (6), 396, 2008
222008
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