Paul P. Gardner

Cited by

	All	Since 2016
Citations	7332	3814
h-index	35	27
i10-index	60	48

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2005200620072008200920102011201220132014201520162017201820192020202153 78 115 169 240 274 368 463 457 597 620 705 738 698 718 799 152

Co-authors

Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Lars BarquistHelmholtz Institute for RNA-based Infection ResearchVerified email at helmholtz-hiri.de
Jennifer DaubUniversity of EdinburghVerified email at ed.ac.uk
Eric NawrockiNational Center for Biotechnology (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Stinus LindgreenCurrent Member of ParliamentVerified email at ft.dk
Sarah BurgeDepartment of Oncology, University of CambridgeVerified email at cam.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Sean R. EddyHHMI & Harvard UniversityVerified email at fas.harvard.edu
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Nicole E WheelerTechnical Consultant, Nuclear Threat InititativeVerified email at sanger.ac.uk
Anthony M PooleSchool of Biological Sciences, University of Auckland, New ZealandVerified email at auckland.ac.nz
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenVerified email at di.ku.dk
Julian ParkhillUniversity of CambridgeVerified email at cam.ac.uk
Robert A KingsleyGroup Leader at the Quadram Institute Bioscience, UKVerified email at quadram.ac.uk
David PennyProfessor of theoretical Biology, Massey UniversityVerified email at massey.ac.nz
Evan FlodenSeqera LabsVerified email at seqera.io
Jeppe VintherAssociate Professor, University ofCopenhagenVerified email at bio.ku.dk
Timothy T PerkinsUniversity of Western AustraliaVerified email at uwa.edu.au
Jyoti ChoudharyFunctional ProteomicsVerified email at icr.ac.uk

Paul P. Gardner

University of Otago, New Zealand

Verified email at otago.ac.nz - Homepage

ncRNA Bioinformatics Genome variation Benchmarking


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Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl 1), D136-D140, 2009	832	2009
Rfam 12.0: updates to the RNA families database EP Nawrocki, SW Burge, A Bateman, J Daub, RY Eberhardt, SR Eddy, ... Nucleic acids research 43 (D1), D130-D137, 2015	818	2015
Rfam 11.0: 10 years of RNA families SW Burge, J Daub, R Eberhardt, J Tate, L Barquist, EP Nawrocki, ... Nucleic acids research 41 (D1), D226-D232, 2013	776	2013
Comparative genomics reveals insights into avian genome evolution and adaptation G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ... Science 346 (6215), 1311-1320, 2014	700	2014
Rfam: Wikipedia, clans and the “decimal” release PP Gardner, J Daub, J Tate, BL Moore, IH Osuch, S Griffiths-Jones, ... Nucleic acids research 39 (suppl 1), D141-D145, 2011	438	2011
A comprehensive comparison of comparative RNA structure prediction approaches PP Gardner, R Giegerich BMC bioinformatics 5 (1), 140, 2004	433	2004
A benchmark of multiple sequence alignment programs upon structural RNAs PP Gardner, A Wilm, S Washietl Nucleic acids research 33 (8), 2433-2439, 2005	331	2005
A strand-specific RNA–Seq analysis of the transcriptome of the typhoid bacillus salmonella typhi TT Perkins, RA Kingsley, MC Fookes, PP Gardner, KD James, L Yu, ... PLoS genetics 5 (7), 2009	259	2009
An evaluation of the accuracy and speed of metagenome analysis tools S Lindgreen, KL Adair, P Gardner Scientific Reports 6 (19), doi:10.1038/srep19233, 2016	253	2016
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture J Vinther, MM Hedegaard, PP Gardner, JS Andersen, P Arctander Nucleic acids research 34 (16), e107-e107, 2006	156	2006
Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA EK Freyhult, JP Bollback, PP Gardner Genome research 17 (1), 117-125, 2007	138	2007
A comparison of RNA folding measures E Freyhult, PP Gardner, V Moulton BMC bioinformatics 6 (1), 241, 2005	134	2005
Comparative genomic data of the Avian Phylogenomics Project G Zhang, B Li, C Li, MTP Gilbert, ED Jarvis, J Wang, TAG Consortium GigaScience 3 (26), doi:10.1186/2047-217X-3-26, 2014	102	2014
Convergent regulatory evolution and loss of flight in paleognathous birds TB Sackton, P Grayson, A Cloutier, Z Hu, JS Liu, NE Wheeler, PP Gardner, ... Science 364 (6435), 74-78, 2019	101*	2019
Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum T Mourier, C Carret, S Kyes, Z Christodoulou, PP Gardner, DC Jeffares, ... Genome research 18 (2), 281-292, 2008	101	2008
A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium L Barquist, GC Langridge, DJ Turner, MD Phan, AK Turner, A Bateman, ... Nucleic acids research 41 (8), 4549-4564, 2013	99	2013
A VapBC Toxin-Antitoxin Module is a Post-Transcriptional Regulator of Metabolic Flux in Mycobacteria JL McKenzie, J Robson, M Berney, TC Smith, A Ruthe, PP Gardner, ... Journal of Bacteriology, 2012	95	2012
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing S Lindgreen, PP Gardner, A Krogh Bioinformatics 23 (24), 3304-3311, 2007	84	2007
The RNA WikiProject: community annotation of RNA families J Daub, PP Gardner, J Tate, D Ramsköld, M Manske, WG Scott, ... Rna 14 (12), 2462-2464, 2008	68	2008
RNIE: genome-wide prediction of bacterial intrinsic terminators PP Gardner, L Barquist, A Bateman, EP Nawrocki, Z Weinberg Nucleic acids research 39 (14), 5845-5852, 2011	66	2011

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