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Caty Chung
Caty Chung
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Verified email at miami.edu
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Year
The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations
AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ...
Cell systems 6 (1), 13-24, 2018
3882018
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data
A Koleti, R Terryn, V Stathias, C Chung, DJ Cooper, JP Turner, D Vidović, ...
Nucleic acids research 46 (D1), D558-D566, 2018
1672018
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures
V Stathias, J Turner, A Koleti, D Vidovic, D Cooper, M Fazel-Najafabadi, ...
Nucleic acids research 48 (D1), D431-D439, 2020
1302020
Evolving BioAssay Ontology (BAO): modularization, integration and applications
S Abeyruwan, UD Vempati, H Küçük-McGinty, U Visser, A Koleti, A Mir, ...
Journal of biomedical semantics 5, 1-22, 2014
962014
Metadata standard and data exchange specifications to describe, model, and integrate complex and diverse high-throughput screening data from the library of integrated network …
UD Vempati, C Chung, C Mader, A Koleti, N Datar, D Vidović, D Wrobel, ...
Journal of biomolecular screening 19 (5), 803-816, 2014
832014
Drug target ontology to classify and integrate drug discovery data
Y Lin, S Mehta, H Küçük-McGinty, JP Turner, D Vidovic, M Forlin, A Koleti, ...
Journal of biomedical semantics 8, 1-16, 2017
752017
Formalization, annotation and analysis of diverse drug and probe screening assay datasets using the BioAssay Ontology (BAO)
UD Vempati, MJ Przydzial, C Chung, S Abeyruwan, A Mir, K Sakurai, ...
PloS one 7 (11), e49198, 2012
652012
Comparison of miniaturized time-resolved fluorescence resonance energy transfer and enzyme-coupled luciferase high-throughput screening assays to discover inhibitors of Rho …
T Schröter, D Minond, A Weiser, C Dao, J Habel, T Spicer, P Chase, ...
SLAS Discovery 13 (1), 17-28, 2008
552008
Discovery of a novel submicromolar inhibitor of the lymphoid specific tyrosine phosphatase
Y Xie, Y Liu, G Gong, A Rinderspacher, SX Deng, DH Smith, U Toebben, ...
Bioorganic & medicinal chemistry letters 18 (9), 2840-2844, 2008
492008
Inhibition of lymphoid tyrosine phosphatase by benzofuran salicylic acids
T Vang, Y Xie, WH Liu, D Vidović, Y Liu, S Wu, DH Smith, ...
Journal of medicinal chemistry 54 (2), 562-571, 2011
402011
Discovery of potent non-urea inhibitors of soluble epoxide hydrolase
Y Xie, Y Liu, G Gong, DH Smith, F Yan, A Rinderspacher, Y Feng, Z Zhu, ...
Bioorganic & medicinal chemistry letters 19 (8), 2354-2359, 2009
352009
Identification of N-(quinolin-8-yl) benzenesulfonamides as agents capable of down-regulating NFκB activity within two separate high-throughput screens of NFκB activation
Y Xie, SX Deng, CJ Thomas, Y Liu, YQ Zhang, A Rinderspacher, ...
Bioorganic & medicinal chemistry letters 18 (1), 329-335, 2008
312008
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center
V Stathias, A Koleti, D Vidović, DJ Cooper, KM Jagodnik, R Terryn, ...
Scientific data 5 (1), 1-14, 2018
282018
Potent inhibitors of Huntingtin protein aggregation in a cell-based assay
A Rinderspacher, ML Cremona, Y Liu, SX Deng, Y Xie, G Gong, N Aulner, ...
Bioorganic & medicinal chemistry letters 19 (6), 1715-1717, 2009
172009
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses
E Ong, J Xie, Z Ni, Q Liu, S Sarntivijai, Y Lin, D Cooper, R Terryn, ...
BMC bioinformatics 18, 43-53, 2017
142017
Discovery of novel small molecule cell type-specific enhancers of NF-κB nuclear translocation
G Gong, Y Xie, Y Liu, A Rinderspacher, SX Deng, Y Feng, Z Zhu, Y Tang, ...
Bioorganic & medicinal chemistry letters 19 (4), 1191-1194, 2009
92009
BAOSearch: a semantic web application for biological screening and drug discovery research
S Abeyruwan, C Chung, N Datar, F Gayanilo, A Koleti, V Lemmon, ...
Semantic Web Challenge, 9th International Semantic Web Conference (ISWC), 2010
42010
Distinct functional and conformational states of the human lymphoid tyrosine phosphatase catalytic domain can be targeted by choice of the inhibitor chemotype
D Vidović, Y Xie, A Rinderspacher, SX Deng, DW Landry, C Chung, ...
Journal of computer-aided molecular design 25, 873-883, 2011
22011
Bioassay Ontology to Describe High-Throughput Screening Assays and their Results.
U Vempati, U Visser, S Abeyruwan, K Sakurai, M Przydzial, C Chung, ...
ICBO, 2011
22011
FAIR LINCS Data and Metadata powered by the CEDAR Framework
A Koleti, RS Gonçalves, V Stathias, M Forlin, W Niu, C Monteiro, ...
figshare, 2016
2016
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